Human SNP ID | rs3914132 |
---|---|
Human chromosome | chr7 |
Human SNP position | 103886922 |
Pig chromosome | chr9 |
Pig SNP position | 114531924 |
PubMed ID | 19230858 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19230858 |
Study | A genome-wide analysis identifies genetic variants in the RELN gene associated with otosclerosis. |
Disease/Trait | Otosclerosis |
Initial sample | 302 cases, 302 controls |
Replication sample | 847 cases, 872 controls |
Region | 7q22.1 |
Chromosome id | chr7 |
Chromosome position | 103886922 |
Reported gene | RELN |
Mapped gene | RELN |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5649 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3914132-? |
SNPs | rs3914132 |
Merged | 0 |
SNP id current | 3914132 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.23 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 1.54 |
%95 Ci | [1.32-1.79] |
Platform | Illumina [~ 555000] |
CNV | N |
Mapped trait | Otosclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004213 |
Study accession | GCST000345 |