Human SNP ID | rs3904778 |
---|---|
Human chromosome | chr9 |
Human SNP position | 16681995 |
Pig chromosome | chr1 |
Pig SNP position | 229848807 |
PubMed ID | 26211971 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26211971 |
Study | A Functional SNP in BNC2 Is Associated with Adolescent Idiopathic Scoliosis. |
Disease/Trait | Adolescent idiopathic scoliosis |
Initial sample | 2,109 Japanese ancestry cases, 11,140 Japanese ancestry controls |
Replication sample | 2,223 East Asian ancestry cases, 4,724 East Asian ancestry controls |
Region | 9p22.2 |
Chromosome id | chr9 |
Chromosome position | 16681995 |
Reported gene | BNC2 |
Mapped gene | BNC2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54796 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3904778-G |
SNPs | rs3904778 |
Merged | |
SNP id current | 3904778 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.414 |
P value | 0.0000000000002 |
Pvalue mlog | 12.698970004336 |
P value text | |
Or beta | 1.21 |
%95 Ci | [1.15-1.27] |
Platform | Illumina [4420789] (imputed) |
CNV | N |
Mapped trait | adolescent idiopathic scoliosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005423 |
Study accession | GCST003052 |
PubMed ID | 26211971 |
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26211971 |
Study | A Functional SNP in BNC2 Is Associated with Adolescent Idiopathic Scoliosis. |
Disease/Trait | Adolescent idiopathic scoliosis |
Initial sample | 2,109 Japanese ancestry cases, 11,140 Japanese ancestry controls |
Replication sample | 2,223 East Asian ancestry cases, 4,724 East Asian ancestry controls |
Region | 9p22.2 |
Chromosome id | chr9 |
Chromosome position | 16681995 |
Reported gene | BNC2 |
Mapped gene | BNC2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54796 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3904778-G |
SNPs | rs3904778 |
Merged | |
SNP id current | 3904778 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.414 |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | (Japanese) |
Or beta | 1.21 |
%95 Ci | [1.14-1.28] |
Platform | Illumina [4420789] (imputed) |
CNV | N |
Mapped trait | adolescent idiopathic scoliosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005423 |
Study accession | GCST003052 |