SNP Detail For rs3904778
1.Mapping Information
Human SNP ID rs3904778
Human chromosome chr9
Human SNP position 16681995
Pig chromosome chr1
Pig SNP position 229848807
2.Annotation Information
PubMed ID26211971
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26211971
StudyA Functional SNP in BNC2 Is Associated with Adolescent Idiopathic Scoliosis.
Disease/TraitAdolescent idiopathic scoliosis
Initial sample2,109 Japanese ancestry cases, 11,140 Japanese ancestry controls
Replication sample2,223 East Asian ancestry cases, 4,724 East Asian ancestry controls
Region9p22.2
Chromosome idchr9
Chromosome position16681995
Reported geneBNC2
Mapped geneBNC2
Upstream gene id
Downstream gene id
SNP gene ids54796
Upstream gene distance
Downstream gene distance
SNP risk allelers3904778-G
SNPsrs3904778
Merged
SNP id current3904778
Contextintron_variant
Intergenic0
Allele frequency0.414
P value0.0000000000002
Pvalue mlog12.698970004336
P value text
Or beta1.21
%95 Ci[1.15-1.27]
PlatformIllumina [4420789] (imputed)
CNVN
Mapped traitadolescent idiopathic scoliosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005423
Study accessionGCST003052
PubMed ID26211971
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26211971
StudyA Functional SNP in BNC2 Is Associated with Adolescent Idiopathic Scoliosis.
Disease/TraitAdolescent idiopathic scoliosis
Initial sample2,109 Japanese ancestry cases, 11,140 Japanese ancestry controls
Replication sample2,223 East Asian ancestry cases, 4,724 East Asian ancestry controls
Region9p22.2
Chromosome idchr9
Chromosome position16681995
Reported geneBNC2
Mapped geneBNC2
Upstream gene id
Downstream gene id
SNP gene ids54796
Upstream gene distance
Downstream gene distance
SNP risk allelers3904778-G
SNPsrs3904778
Merged
SNP id current3904778
Contextintron_variant
Intergenic0
Allele frequency0.414
P value0.00000005
Pvalue mlog7.30102999566398
P value text(Japanese)
Or beta1.21
%95 Ci[1.14-1.28]
PlatformIllumina [4420789] (imputed)
CNVN
Mapped traitadolescent idiopathic scoliosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005423
Study accessionGCST003052