Human SNP ID | rs3902751 |
---|---|
Human chromosome | chr7 |
Human SNP position | 25822019 |
Pig chromosome | JH118567-1 |
Pig SNP position | 183033 |
PubMed ID | 25673412 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 7p15.2 |
Chromosome id | chr7 |
Chromosome position | 25822019 |
Reported gene | NFE2L3 |
Mapped gene | LOC105375197 - LOC100506236 |
Upstream gene id | 105375197 |
Downstream gene id | 100506236 |
SNP gene ids | |
Upstream gene distance | 44823 |
Downstream gene distance | 9272 |
SNP risk allele | rs3902751-A |
SNPs | rs3902751 |
Merged | 0 |
SNP id current | 3902751 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.2474 |
P value | 0.0000000000001 |
Pvalue mlog | 13 |
P value text | (EA, women) |
Or beta | 0.0386 |
%95 Ci | [0.028-0.049] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |
PubMed ID | 25673412 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 7p15.2 |
Chromosome id | chr7 |
Chromosome position | 25822019 |
Reported gene | NFE2L3 |
Mapped gene | LOC105375197 - LOC100506236 |
Upstream gene id | 105375197 |
Downstream gene id | 100506236 |
SNP gene ids | |
Upstream gene distance | 44823 |
Downstream gene distance | 9272 |
SNP risk allele | rs3902751-A |
SNPs | rs3902751 |
Merged | 0 |
SNP id current | 3902751 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.2501 |
P value | 0.00000000000006 |
Pvalue mlog | 13.2218487496163 |
P value text | (EA) |
Or beta | 0.0294 |
%95 Ci | [0.022-0.037] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |
PubMed ID | 25673412 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 7p15.2 |
Chromosome id | chr7 |
Chromosome position | 25822019 |
Reported gene | NFE2L3 |
Mapped gene | LOC105375197 - LOC100506236 |
Upstream gene id | 105375197 |
Downstream gene id | 100506236 |
SNP gene ids | |
Upstream gene distance | 44823 |
Downstream gene distance | 9272 |
SNP risk allele | rs3902751-A |
SNPs | rs3902751 |
Merged | 0 |
SNP id current | 3902751 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.2613 |
P value | 0.000000000001 |
Pvalue mlog | 12 |
P value text | (women) |
Or beta | 0.0358 |
%95 Ci | [0.026-0.046] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |
PubMed ID | 25673412 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 7p15.2 |
Chromosome id | chr7 |
Chromosome position | 25822019 |
Reported gene | NFE2L3 |
Mapped gene | LOC105375197 - LOC100506236 |
Upstream gene id | 105375197 |
Downstream gene id | 100506236 |
SNP gene ids | |
Upstream gene distance | 44823 |
Downstream gene distance | 9272 |
SNP risk allele | rs3902751-A |
SNPs | rs3902751 |
Merged | 0 |
SNP id current | 3902751 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.2675 |
P value | 0.0000000000002 |
Pvalue mlog | 12.698970004336 |
P value text | |
Or beta | 0.0277 |
%95 Ci | [0.02-0.035] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |