Human SNP ID | rs38989 |
---|---|
Human chromosome | chr7 |
Human SNP position | 153881331 |
Pig chromosome | chr18 |
Pig SNP position | 4250973 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 7q36.2 |
Chromosome id | chr7 |
Chromosome position | 153881331 |
Reported gene | NR |
Mapped gene | LOC105375583 - DPP6 |
Upstream gene id | 105375583 |
Downstream gene id | 1804 |
SNP gene ids | |
Upstream gene distance | 125427 |
Downstream gene distance | 5766 |
SNP risk allele | rs38989-G |
SNPs | rs38989 |
Merged | 0 |
SNP id current | 38989 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.405296777978339 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (IGP52) |
Or beta | 0.1524 |
%95 Ci | [0.086-0.219] unit decrease |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |