SNP Detail For rs38989
1.Mapping Information
Human SNP ID rs38989
Human chromosome chr7
Human SNP position 153881331
Pig chromosome chr18
Pig SNP position 4250973
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region7q36.2
Chromosome idchr7
Chromosome position153881331
Reported geneNR
Mapped geneLOC105375583 - DPP6
Upstream gene id105375583
Downstream gene id1804
SNP gene ids
Upstream gene distance125427
Downstream gene distance5766
SNP risk allelers38989-G
SNPsrs38989
Merged0
SNP id current38989
Contextintergenic_variant
Intergenic1
Allele frequency0.405296777978339
P value0.000007
Pvalue mlog5.15490195998574
P value text(IGP52)
Or beta0.1524
%95 Ci[0.086-0.219] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848