SNP Detail For rs389884
1.Mapping Information
Human SNP ID rs389884
Human chromosome chr6
Human SNP position 31973120
Pig chromosome chr7
Pig SNP position 27751167
2.Annotation Information
PubMed ID23263863
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23263863
StudyGWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.
Disease/TraitHematology traits
Initial sample7,943 African American children, 6,234 European ancestry children
Replication sampleNA
Region6p21.33
Chromosome idchr6
Chromosome position31973120
Reported geneCFB, STK19, ZBTB12
Mapped geneSTK19
Upstream gene id
Downstream gene id
SNP gene ids8859
Upstream gene distance
Downstream gene distance
SNP risk allelers389884-C
SNPsrs389884
Merged0
SNP id current389884
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.0953
P value0.00000002
Pvalue mlog7.69897000433601
P value text(EA, WBC)
Or beta0.0254
%95 Ci[0.017-0.034] unit decrease
PlatformIllumina [544917]
CNVN
Mapped traitleukocyte count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004308
Study accessionGCST001779
PubMed ID21323541
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/21323541
StudyRisk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.
Disease/TraitIdiopathic membranous nephropathy
Initial sample556 European ancestry cases, 2,338 European ancestry controls
Replication sampleNA
Region6p21.33
Chromosome idchr6
Chromosome position31973120
Reported geneintergenic
Mapped geneSTK19
Upstream gene id
Downstream gene id
SNP gene ids8859
Upstream gene distance
Downstream gene distance
SNP risk allelers389884-C
SNPsrs389884
Merged0
SNP id current389884
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.1148
P value8E-66
Pvalue mlog65.096910013008
P value text
Or beta3.65
%95 Ci[NR]
PlatformIllumina [242824]
CNVN
Mapped traitmembranous glomerulonephritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004254
Study accessionGCST000984