Human SNP ID | rs389884 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31973120 |
Pig chromosome | chr7 |
Pig SNP position | 27751167 |
PubMed ID | 23263863 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23263863 |
Study | GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children. |
Disease/Trait | Hematology traits |
Initial sample | 7,943 African American children, 6,234 European ancestry children |
Replication sample | NA |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31973120 |
Reported gene | CFB, STK19, ZBTB12 |
Mapped gene | STK19 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8859 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs389884-C |
SNPs | rs389884 |
Merged | 0 |
SNP id current | 389884 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.0953 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | (EA, WBC) |
Or beta | 0.0254 |
%95 Ci | [0.017-0.034] unit decrease |
Platform | Illumina [544917] |
CNV | N |
Mapped trait | leukocyte count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004308 |
Study accession | GCST001779 |
PubMed ID | 21323541 |
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/21323541 |
Study | Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy. |
Disease/Trait | Idiopathic membranous nephropathy |
Initial sample | 556 European ancestry cases, 2,338 European ancestry controls |
Replication sample | NA |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31973120 |
Reported gene | intergenic |
Mapped gene | STK19 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8859 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs389884-C |
SNPs | rs389884 |
Merged | 0 |
SNP id current | 389884 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.1148 |
P value | 8E-66 |
Pvalue mlog | 65.096910013008 |
P value text | |
Or beta | 3.65 |
%95 Ci | [NR] |
Platform | Illumina [242824] |
CNV | N |
Mapped trait | membranous glomerulonephritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004254 |
Study accession | GCST000984 |