SNP Detail For rs3893319
1.Mapping Information
Human SNP ID rs3893319
Human chromosome chr1
Human SNP position 24179559
Pig chromosome JH118535-1
Pig SNP position 31439
2.Annotation Information
PubMed ID21844884
JournalPharmacogenomics J
Linkwww.ncbi.nlm.nih.gov/pubmed/21844884
StudyGenome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations
Disease/TraitResponse to platinum-based chemotherapy (carboplatin)
Initial sample176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines
Replication sampleNA
Region1p36.11
Chromosome idchr1
Chromosome position24179559
Reported geneIL28RA
Mapped geneIFNLR1
Upstream gene id
Downstream gene id
SNP gene ids163702
Upstream gene distance
Downstream gene distance
SNP risk allelers3893319-?
SNPsrs3893319
Merged0
SNP id current3893319
Contextintron_variant
Intergenic0
Allele frequency
P value0.000001
Pvalue mlog6
P value text
Or beta
%95 Ci
PlatformNR [~ 3000000] (imputed)
CNVN
Mapped traitresponse to carboplatin
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097328
Study accessionGCST001204