SNP Detail For rs3885907
1.Mapping Information
Human SNP ID rs3885907
Human chromosome chr13
Human SNP position 30740318
Pig chromosome chr11
Pig SNP position 7264855
2.Annotation Information
PubMed ID24025145
JournalBreast Cancer Res
Linkwww.ncbi.nlm.nih.gov/pubmed/24025145
StudyA genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.
Disease/TraitAdverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+epirubicin+/-5FU)
Initial sample116 Japanese ancestry cases, 108 Japanese ancestry controls
Replication sampleNA
Region13q12.3
Chromosome idchr13
Chromosome position30740318
Reported geneALOX5AP
Mapped geneALOX5AP
Upstream gene id
Downstream gene id
SNP gene ids241
Upstream gene distance
Downstream gene distance
SNP risk allelers3885907-G
SNPsrs3885907
Merged0
SNP id current3885907
Contextintron_variant
Intergenic0
Allele frequency0.18
P value0.000001
Pvalue mlog6
P value text(Dominant)
Or beta2.66
%95 Ci[1.71-4.13]
PlatformIllumina [555600]
CNVN
Mapped traitresponse to epirubicin, response to cyclophosphamide, chemotherapy-induced alopecia, response to 5__ fluorouracil
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_1902522, http://purl.obolibrary.org/obo/GO_1902518, http://www.ebi.ac.uk/efo/EFO_0005400, http://purl.obolibrary.org/obo/GO_0036275
Study accessionGCST002176