Human SNP ID | rs3885907 |
---|---|
Human chromosome | chr13 |
Human SNP position | 30740318 |
Pig chromosome | chr11 |
Pig SNP position | 7264855 |
PubMed ID | 24025145 |
---|---|
Journal | Breast Cancer Res |
Link | www.ncbi.nlm.nih.gov/pubmed/24025145 |
Study | A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients. |
Disease/Trait | Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+epirubicin+/-5FU) |
Initial sample | 116 Japanese ancestry cases, 108 Japanese ancestry controls |
Replication sample | NA |
Region | 13q12.3 |
Chromosome id | chr13 |
Chromosome position | 30740318 |
Reported gene | ALOX5AP |
Mapped gene | ALOX5AP |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 241 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3885907-G |
SNPs | rs3885907 |
Merged | 0 |
SNP id current | 3885907 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.18 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (Dominant) |
Or beta | 2.66 |
%95 Ci | [1.71-4.13] |
Platform | Illumina [555600] |
CNV | N |
Mapped trait | response to epirubicin, response to cyclophosphamide, chemotherapy-induced alopecia, response to 5__ fluorouracil |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_1902522, http://purl.obolibrary.org/obo/GO_1902518, http://www.ebi.ac.uk/efo/EFO_0005400, http://purl.obolibrary.org/obo/GO_0036275 |
Study accession | GCST002176 |