SNP Detail For rs387619
1.Mapping Information
Human SNP ID rs387619
Human chromosome chr11
Human SNP position 35076646
Pig chromosome chr2
Pig SNP position 28306907
2.Annotation Information
PubMed ID26502338
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26502338
StudyGenetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.
Disease/TraitSystemic lupus erythematosus
Initial sample5,201 European ancestry cases, 9,066 European ancestry controls
Replication sampleNA
Region11p13
Chromosome idchr11
Chromosome position35076646
Reported geneCD44
Mapped geneLOC105376626 - LOC105376627
Upstream gene id105376626
Downstream gene id105376627
SNP gene ids
Upstream gene distance9392
Downstream gene distance10154
SNP risk allelers387619-C
SNPsrs387619
Merged
SNP id current387619
Contextregulatory_region_variant
Intergenic1
Allele frequency
P value0.0000000000003
Pvalue mlog12.5228787452803
P value text
Or beta1.21
%95 Ci[NR]
PlatformIllumina [> 644674] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003156