Human SNP ID | rs387619 |
---|---|
Human chromosome | chr11 |
Human SNP position | 35076646 |
Pig chromosome | chr2 |
Pig SNP position | 28306907 |
PubMed ID | 26502338 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26502338 |
Study | Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 5,201 European ancestry cases, 9,066 European ancestry controls |
Replication sample | NA |
Region | 11p13 |
Chromosome id | chr11 |
Chromosome position | 35076646 |
Reported gene | CD44 |
Mapped gene | LOC105376626 - LOC105376627 |
Upstream gene id | 105376626 |
Downstream gene id | 105376627 |
SNP gene ids | |
Upstream gene distance | 9392 |
Downstream gene distance | 10154 |
SNP risk allele | rs387619-C |
SNPs | rs387619 |
Merged | |
SNP id current | 387619 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.0000000000003 |
Pvalue mlog | 12.5228787452803 |
P value text | |
Or beta | 1.21 |
%95 Ci | [NR] |
Platform | Illumina [> 644674] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST003156 |