Human SNP ID | rs3875149 |
---|---|
Human chromosome | chr19 |
Human SNP position | 40854091 |
Pig chromosome | chr6 |
Pig SNP position | 44867765 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1 |
Initial sample | 10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals |
Replication sample | NA |
Region | 19q13.2 |
Chromosome id | chr19 |
Chromosome position | 40854091 |
Reported gene | Intergenic |
Mapped gene | CYP2A6 - CYP2A7 |
Upstream gene id | 1548 |
Downstream gene id | 1549 |
SNP gene ids | |
Upstream gene distance | 3644 |
Downstream gene distance | 21348 |
SNP risk allele | rs3875149-A |
SNPs | rs3875149 |
Merged | 0 |
SNP id current | 3875149 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.386 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | |
Or beta | 0.061 |
%95 Ci | NR unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | forced expiratory volume, response to bronchodilator |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366 |
Study accession | GCST003262 |
PubMed ID | 26634245 |
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1/FVC ratio |
Initial sample | 10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals |
Replication sample | NA |
Region | 19q13.2 |
Chromosome id | chr19 |
Chromosome position | 40854091 |
Reported gene | Intergenic |
Mapped gene | CYP2A6 - CYP2A7 |
Upstream gene id | 1548 |
Downstream gene id | 1549 |
SNP gene ids | |
Upstream gene distance | 3644 |
Downstream gene distance | 21348 |
SNP risk allele | rs3875149-A |
SNPs | rs3875149 |
Merged | 0 |
SNP id current | 3875149 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.388 |
P value | 0.00000006 |
Pvalue mlog | 7.22184874961635 |
P value text | |
Or beta | 0.013 |
%95 Ci | unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | response to bronchodilator, FEV/FEC ratio |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003264 |