SNP Detail For rs3865188
1.Mapping Information
Human SNP ID rs3865188
Human chromosome chr16
Human SNP position 82617112
Pig chromosome chr6
Pig SNP position 6367855
2.Annotation Information
PubMed ID20876611
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20876611
StudyGenome-wide association study for adiponectin levels in Filipino women identifies CDH13 and a novel uncommon haplotype at KNG1-ADIPOQ.
Disease/TraitAdiponectin levels
Initial sample1,776 Filipino ancestry female individuals
Replication sample1,774 Filipino ancestry offspring
Region16q23.3
Chromosome idchr16
Chromosome position82617112
Reported geneCDH13
Mapped geneLOC101928392 - CDH13
Upstream gene id101928392
Downstream gene id1012
SNP gene ids
Upstream gene distance41651
Downstream gene distance9682
SNP risk allelers3865188-T
SNPsrs3865188
Merged0
SNP id current3865188
Contextintergenic_variant
Intergenic1
Allele frequency0.47
P value4E-30
Pvalue mlog29.397940008672
P value text
Or beta0.11
%95 Ci[0.09-0.13] unit decrease
PlatformAffymetrix [2073674] (imputed)
CNVN
Mapped traitadiponectin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004502
Study accessionGCST000812
PubMed ID20887962
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20887962
StudyAdiponectin concentrations: a genome-wide association study.
Disease/TraitAdiponectin levels
Initial sample4,001 Korean ancestry individuals
Replication sample2,304 Korean ancestry individuals
Region16q23.3
Chromosome idchr16
Chromosome position82617112
Reported geneCDH13
Mapped geneLOC101928392 - CDH13
Upstream gene id101928392
Downstream gene id1012
SNP gene ids
Upstream gene distance41651
Downstream gene distance9682
SNP risk allelers3865188-?
SNPsrs3865188
Merged0
SNP id current3865188
Contextintergenic_variant
Intergenic1
Allele frequency0.3
P value3E-83
Pvalue mlog82.5228787452803
P value text
Or beta0.09
%95 Ci[NR] ug/ml decrease
PlatformAffymetrix [up to 354357]
CNVN
Mapped traitadiponectin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004502
Study accessionGCST000828