Human SNP ID | rs3865188 |
---|---|
Human chromosome | chr16 |
Human SNP position | 82617112 |
Pig chromosome | chr6 |
Pig SNP position | 6367855 |
PubMed ID | 20876611 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20876611 |
Study | Genome-wide association study for adiponectin levels in Filipino women identifies CDH13 and a novel uncommon haplotype at KNG1-ADIPOQ. |
Disease/Trait | Adiponectin levels |
Initial sample | 1,776 Filipino ancestry female individuals |
Replication sample | 1,774 Filipino ancestry offspring |
Region | 16q23.3 |
Chromosome id | chr16 |
Chromosome position | 82617112 |
Reported gene | CDH13 |
Mapped gene | LOC101928392 - CDH13 |
Upstream gene id | 101928392 |
Downstream gene id | 1012 |
SNP gene ids | |
Upstream gene distance | 41651 |
Downstream gene distance | 9682 |
SNP risk allele | rs3865188-T |
SNPs | rs3865188 |
Merged | 0 |
SNP id current | 3865188 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.47 |
P value | 4E-30 |
Pvalue mlog | 29.397940008672 |
P value text | |
Or beta | 0.11 |
%95 Ci | [0.09-0.13] unit decrease |
Platform | Affymetrix [2073674] (imputed) |
CNV | N |
Mapped trait | adiponectin measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004502 |
Study accession | GCST000812 |
PubMed ID | 20887962 |
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20887962 |
Study | Adiponectin concentrations: a genome-wide association study. |
Disease/Trait | Adiponectin levels |
Initial sample | 4,001 Korean ancestry individuals |
Replication sample | 2,304 Korean ancestry individuals |
Region | 16q23.3 |
Chromosome id | chr16 |
Chromosome position | 82617112 |
Reported gene | CDH13 |
Mapped gene | LOC101928392 - CDH13 |
Upstream gene id | 101928392 |
Downstream gene id | 1012 |
SNP gene ids | |
Upstream gene distance | 41651 |
Downstream gene distance | 9682 |
SNP risk allele | rs3865188-? |
SNPs | rs3865188 |
Merged | 0 |
SNP id current | 3865188 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.3 |
P value | 3E-83 |
Pvalue mlog | 82.5228787452803 |
P value text | |
Or beta | 0.09 |
%95 Ci | [NR] ug/ml decrease |
Platform | Affymetrix [up to 354357] |
CNV | N |
Mapped trait | adiponectin measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004502 |
Study accession | GCST000828 |