Human SNP ID | rs3859192 |
---|---|
Human chromosome | chr17 |
Human SNP position | 39972395 |
Pig chromosome | chr12 |
Pig SNP position | 22828817 |
PubMed ID | 22037903 |
---|---|
Journal | Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22037903 |
Study | Genetic variants associated with the white blood cell count in 13,923 subjects in the eMERGE Network. |
Disease/Trait | White blood cell count |
Initial sample | 12,046 European ancestry individuals, 1,487 African ancestry individuals |
Replication sample | NA |
Region | 17q21.1 |
Chromosome id | chr17 |
Chromosome position | 39972395 |
Reported gene | GSDMA, PSMD3, MED24 |
Mapped gene | GSDMA |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 284110 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3859192-A |
SNPs | rs3859192 |
Merged | 0 |
SNP id current | 3859192 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.47 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | (EA) |
Or beta | 0.14 |
%95 Ci | [0.10-0.18] K/ul increase |
Platform | Illumina [532566] |
CNV | N |
Mapped trait | leukocyte count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004308 |
Study accession | GCST001302 |