SNP Detail For rs3859192
1.Mapping Information
Human SNP ID rs3859192
Human chromosome chr17
Human SNP position 39972395
Pig chromosome chr12
Pig SNP position 22828817
2.Annotation Information
PubMed ID22037903
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22037903
StudyGenetic variants associated with the white blood cell count in 13,923 subjects in the eMERGE Network.
Disease/TraitWhite blood cell count
Initial sample12,046 European ancestry individuals, 1,487 African ancestry individuals
Replication sampleNA
Region17q21.1
Chromosome idchr17
Chromosome position39972395
Reported geneGSDMA, PSMD3, MED24
Mapped geneGSDMA
Upstream gene id
Downstream gene id
SNP gene ids284110
Upstream gene distance
Downstream gene distance
SNP risk allelers3859192-A
SNPsrs3859192
Merged0
SNP id current3859192
Contextintron_variant
Intergenic0
Allele frequency0.47
P value0.000000000002
Pvalue mlog11.698970004336
P value text(EA)
Or beta0.14
%95 Ci[0.10-0.18] K/ul increase
PlatformIllumina [532566]
CNVN
Mapped traitleukocyte count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004308
Study accessionGCST001302