SNP Detail For rs3857747
1.Mapping Information
Human SNP ID rs3857747
Human chromosome chr7
Human SNP position 40322235
Pig chromosome chr18
Pig SNP position 59438780
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region7p14.1
Chromosome idchr7
Chromosome position40322235
Reported geneNR
Mapped geneSUGCT
Upstream gene id
Downstream gene id
SNP gene ids79783
Upstream gene distance
Downstream gene distance
SNP risk allelers3857747-?
SNPsrs3857747
Merged
SNP id current3857747
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text(EA)
Or beta0.2401
%95 Ci[0.15-0.33] unit increase
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956