SNP Detail For rs3853824
1.Mapping Information
Human SNP ID rs3853824
Human chromosome chr17
Human SNP position 56803632
Pig chromosome chr12
Pig SNP position 33938844
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitCrohn__s disease
Initial sample5,956 European ancestry cases, 14,927 European ancestry controls
Replication sample14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region17q22
Chromosome idchr17
Chromosome position56803632
Reported geneintergenic
Mapped geneC17orf67
Upstream gene id
Downstream gene id
SNP gene ids339210
Upstream gene distance
Downstream gene distance
SNP risk allelers3853824-A
SNPsrs3853824
Merged
SNP id current3853824
Contextintron_variant
Intergenic0
Allele frequency0.64
P value0.0000000001
Pvalue mlog10
P value text(EA)
Or beta1.0847627
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST003044
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region17q22
Chromosome idchr17
Chromosome position56803632
Reported geneNR
Mapped geneC17orf67
Upstream gene id
Downstream gene id
SNP gene ids339210
Upstream gene distance
Downstream gene distance
SNP risk allelers3853824-G
SNPsrs3853824
Merged
SNP id current3853824
Contextintron_variant
Intergenic0
Allele frequency0.64
P value0.0000000008
Pvalue mlog9.09691001300805
P value text(EA)
Or beta1.0661255
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043