SNP Detail For rs3853444
1.Mapping Information
Human SNP ID rs3853444
Human chromosome chr4
Human SNP position 110812980
Pig chromosome chr8
Pig SNP position 119604104
2.Annotation Information
PubMed ID24778558
JournalBalkan J Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24778558
StudyRTN4 and FBXL17 Genes are Associated with Coronary Heart Disease in Genome-Wide Association Analysis of Lithuanian Families.
Disease/TraitCoronary heart disease
Initial sample31 European ancestry cases and 63 European ancestry controls from 32 families
Replication sampleNA
Region4q25
Chromosome idchr4
Chromosome position110812980
Reported geneintergenic
Mapped genePITX2 - MIR297
Upstream gene id5308
Downstream gene id100126354
SNP gene ids
Upstream gene distance170857
Downstream gene distance47602
SNP risk allelers3853444-G
SNPsrs3853444
Merged0
SNP id current3853444
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta7.69
%95 Ci[2.70-20.0]
PlatformIllumina [646445]
CNVN
Mapped traitcoronary heart disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001645
Study accessionGCST002298