Human SNP ID | rs3851634 |
---|---|
Human chromosome | chr12 |
Human SNP position | 106419124 |
Pig chromosome | chr5 |
Pig SNP position | 13985077 |
PubMed ID | 26424050 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26424050 |
Study | Genome-wide association study identifies multiple susceptibility loci for glioma. |
Disease/Trait | Glioma |
Initial sample | 1,783 Northern European ancestry glioblastoma cases, 2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls |
Replication sample | 1,490 European ancestry cases, 1,723 European ancestry control |
Region | 12q23.3 |
Chromosome id | chr12 |
Chromosome position | 106419124 |
Reported gene | POLR3B |
Mapped gene | POLR3B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55703 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3851634-T |
SNPs | rs3851634 |
Merged | 0 |
SNP id current | 3851634 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.7 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.09-1.22] |
Platform | Illumina [at least 8427548] (imputed) |
CNV | N |
Mapped trait | central nervous system cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000326 |
Study accession | GCST003228 |
PubMed ID | 26424050 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26424050 |
Study | Genome-wide association study identifies multiple susceptibility loci for glioma. |
Disease/Trait | Glioblastoma |
Initial sample | 1,783 Northern European ancestry cases, 7,435 Northern European ancestry controls |
Replication sample | up to 1,490 European ancestry cases, up to 1,723 European ancestry controls |
Region | 12q23.3 |
Chromosome id | chr12 |
Chromosome position | 106419124 |
Reported gene | POLR3B |
Mapped gene | POLR3B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55703 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3851634-T |
SNPs | rs3851634 |
Merged | 0 |
SNP id current | 3851634 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.7 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.2345679 |
%95 Ci | [1.15-1.32] |
Platform | Illumina [at least 8427548] (imputed) |
CNV | N |
Mapped trait | glioblastoma multiforme |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000519 |
Study accession | GCST003220 |