SNP Detail For rs3851179
1.Mapping Information
Human SNP ID rs3851179
Human chromosome chr11
Human SNP position 86157598
Pig chromosome chr9
Pig SNP position 22265719
2.Annotation Information
PubMed ID19734902
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19734902
StudyGenome-wide association study identifies variants at CLU and PICALM associated with Alzheimer__s disease.
Disease/TraitAlzheimer__s disease
Initial sample3,941 European ancestry cases, 7,848 European ancestry controls
Replication sample2,023 European ancestry cases, 2,340 European ancestry controls
Region11q14.2
Chromosome idchr11
Chromosome position86157598
Reported genePICALM
Mapped genePICALM - FNTAP1
Upstream gene id8301
Downstream gene id283226
SNP gene ids
Upstream gene distance87717
Downstream gene distance37533
SNP risk allelers3851179-?
SNPsrs3851179
Merged0
SNP id current3851179
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.63
P value0.000000001
Pvalue mlog9
P value text
Or beta1.16
%95 Ci[1.11-1.22]
PlatformIllumina [529205]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST000479
PubMed ID25778476
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25778476
StudyA novel Alzheimer disease locus located near the gene encoding tau protein.
Disease/TraitAlzheimer__s disease in APOE e4- carriers
Initial sample7,184 cases, 26,968 controls
Replication sample718 European ancestry cases, 1,699 European ancestry controls
Region11q14.2
Chromosome idchr11
Chromosome position86157598
Reported genePICALM
Mapped genePICALM - FNTAP1
Upstream gene id8301
Downstream gene id283226
SNP gene ids
Upstream gene distance87717
Downstream gene distance37533
SNP risk allelers3851179-C
SNPsrs3851179
Merged0
SNP id current3851179
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.65
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.1235955
%95 Ci[1.06-1.18]
PlatformNR [NR]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST002817