SNP Detail For rs3827886
1.Mapping Information
Human SNP ID rs3827886
Human chromosome chr12
Human SNP position 14507250
Pig chromosome chr5
Pig SNP position 61439666
2.Annotation Information
PubMed ID22952603
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22952603
StudyGenome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).
Disease/TraitResponse to amphetamines
Initial sample1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals
Replication sampleNA
Region12p13.1
Chromosome idchr12
Chromosome position14507250
Reported genePLBD1
Mapped genePLBD1
Upstream gene id
Downstream gene id
SNP gene ids79887
Upstream gene distance
Downstream gene distance
SNP risk allelers3827886-?
SNPsrs3827886
Merged0
SNP id current3827886
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text(SF9)
Or beta
%95 Ci
PlatformAffymetrix [5476100] (imputed)
CNVN
Mapped traitresponse to drug
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0042493
Study accessionGCST001651