SNP Detail For rs3826795
1.Mapping Information
Human SNP ID rs3826795
Human chromosome chr19
Human SNP position 46297176
Pig chromosome chr6
Pig SNP position 47601580
2.Annotation Information
PubMed ID24554482
JournalJ Neurovirol
Linkwww.ncbi.nlm.nih.gov/pubmed/24554482
StudyGenome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.
Disease/TraitResponse to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy)
Initial sample40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls
Replication sampleNA
Region19q13.32
Chromosome idchr19
Chromosome position46297176
Reported geneHIF3A
Mapped geneHIF3A
Upstream gene id
Downstream gene id
SNP gene ids64344
Upstream gene distance
Downstream gene distance
SNP risk allelers3826795-?
SNPsrs3826795
Merged0
SNP id current3826795
Contextintron_variant
Intergenic0
Allele frequency
P value0.000003
Pvalue mlog5.52287874528033
P value text(Hispanic)
Or beta12.8
%95 Ci[NR]
PlatformIllumina [936149]
CNVN
Mapped traitresponse to reverse transcriptase inhibitor, HIV-1 infection, peripheral neuropathy
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0061479, http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0003100
Study accessionGCST002366