Human SNP ID | rs3826782 |
---|---|
Human chromosome | chr19 |
Human SNP position | 6887725 |
Pig chromosome | chr2 |
Pig SNP position | 72796019 |
PubMed ID | 23459936 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23459936 |
Study | Exploring the genetic basis of chronic periodontitis: a genome-wide association study. |
Disease/Trait | Periodontitis |
Initial sample | 4,504 European ancestry individuals |
Replication sample | 656 European ancestry and African American individuals |
Region | 19p13.3 |
Chromosome id | chr19 |
Chromosome position | 6887725 |
Reported gene | EMR1, VAV1 |
Mapped gene | ADGRE1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2015 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3826782-? |
SNPs | rs3826782 |
Merged | 0 |
SNP id current | 3826782 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | (Moderate CPd) |
Or beta | 2.01 |
%95 Ci | [1.52-2.65] |
Platform | Affymetrix [2135236] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST001888 |