SNP Detail For rs3826782
1.Mapping Information
Human SNP ID rs3826782
Human chromosome chr19
Human SNP position 6887725
Pig chromosome chr2
Pig SNP position 72796019
2.Annotation Information
PubMed ID23459936
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23459936
StudyExploring the genetic basis of chronic periodontitis: a genome-wide association study.
Disease/TraitPeriodontitis
Initial sample4,504 European ancestry individuals
Replication sample656 European ancestry and African American individuals
Region19p13.3
Chromosome idchr19
Chromosome position6887725
Reported geneEMR1, VAV1
Mapped geneADGRE1
Upstream gene id
Downstream gene id
SNP gene ids2015
Upstream gene distance
Downstream gene distance
SNP risk allelers3826782-?
SNPsrs3826782
Merged0
SNP id current3826782
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000008
Pvalue mlog6.09691001300805
P value text(Moderate CPd)
Or beta2.01
%95 Ci[1.52-2.65]
PlatformAffymetrix [2135236] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST001888