Human SNP ID | rs3825932 |
---|---|
Human chromosome | chr15 |
Human SNP position | 78943104 |
Pig chromosome | chr7 |
Pig SNP position | 53642205 |
PubMed ID | 18978792 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18978792 |
Study | Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci. |
Disease/Trait | Type 1 diabetes |
Initial sample | 3,561 European ancestry cases, 4,646 European ancestry controls |
Replication sample | 6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families |
Region | 15q25.1 |
Chromosome id | chr15 |
Chromosome position | 78943104 |
Reported gene | CTSH |
Mapped gene | CTSH |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1512 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3825932-T |
SNPs | rs3825932 |
Merged | 0 |
SNP id current | 3825932 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.68 |
P value | 0.000000000000003 |
Pvalue mlog | 14.5228787452803 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.10-1.22] |
Platform | Affymetrix [up to 335565] |
CNV | N |
Mapped trait | type I diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001359 |
Study accession | GCST000258 |
PubMed ID | 19430480 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19430480 |
Study | Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes. |
Disease/Trait | Type 1 diabetes |
Initial sample | 7,514 cases, 9,045 controls |
Replication sample | 4,267 cases, 4,670 controls, 4,342 trios from 2,319 families |
Region | 15q25.1 |
Chromosome id | chr15 |
Chromosome position | 78943104 |
Reported gene | CTSH |
Mapped gene | CTSH |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1512 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3825932-? |
SNPs | rs3825932 |
Merged | 0 |
SNP id current | 3825932 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [841622] (imputed) |
CNV | N |
Mapped trait | type I diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001359 |
Study accession | GCST000392 |