Human SNP ID | rs3822735 |
---|---|
Human chromosome | chr5 |
Human SNP position | 35799892 |
Pig chromosome | chr16 |
Pig SNP position | 22086944 |
PubMed ID | 23648065 |
---|---|
Journal | Cancer Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/23648065 |
Study | Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. |
Disease/Trait | Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin) |
Initial sample | 261 Japanese ancestry cases, 262 Japanese ancestry controls |
Replication sample | NA |
Region | 5p13.2 |
Chromosome id | chr5 |
Chromosome position | 35799892 |
Reported gene | SPEF2 |
Mapped gene | SPEF2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 79925 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3822735-G |
SNPs | rs3822735 |
Merged | 0 |
SNP id current | 3822735 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.752 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Dominant model) |
Or beta | 2.062 |
%95 Ci | [1.500-2.834] |
Platform | Illumina [733202] |
CNV | N |
Mapped trait | response to carboplatin, response to antineoplastic agent |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097328, http://purl.obolibrary.org/obo/GO_0097327 |
Study accession | GCST002004 |