Human SNP ID | rs3820282 |
---|---|
Human chromosome | chr1 |
Human SNP position | 22141722 |
Pig chromosome | chr6 |
Pig SNP position | 74164358 |
PubMed ID | 25581431 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25581431 |
Study | Identification of six new susceptibility loci for invasive epithelial ovarian cancer. |
Disease/Trait | Epithelial ovarian cancer |
Initial sample | 4,368 European ancestry cases, 9,123 European ancestry controls, |
Replication sample | 2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry sero |
Region | 1p36.12 |
Chromosome id | chr1 |
Chromosome position | 22141722 |
Reported gene | WNT4 |
Mapped gene | LOC105376845, WNT4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105376845, 54361 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3820282-? |
SNPs | rs3820282 |
Merged | 0 |
SNP id current | 3820282 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.06-1.15] |
Platform | Illumina [up to 10962898] (imputed) |
CNV | N |
Mapped trait | Malignant epithelial tumor of ovary |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_398934 |
Study accession | GCST002748 |
PubMed ID | 25581431 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25581431 |
Study | Identification of six new susceptibility loci for invasive epithelial ovarian cancer. |
Disease/Trait | Epithelial ovarian cancer |
Initial sample | 4,368 European ancestry cases, 9,123 European ancestry controls, |
Replication sample | 2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry sero |
Region | 1p36.12 |
Chromosome id | chr1 |
Chromosome position | 22141722 |
Reported gene | WNT4 |
Mapped gene | LOC105376845, WNT4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105376845, 54361 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3820282-? |
SNPs | rs3820282 |
Merged | 0 |
SNP id current | 3820282 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | (Serous) |
Or beta | 1.12 |
%95 Ci | [1.07-1.17] |
Platform | Illumina [up to 10962898] (imputed) |
CNV | N |
Mapped trait | Malignant epithelial tumor of ovary |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_398934 |
Study accession | GCST002748 |