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SNP Detail For rs3817334
1.Mapping Information
| Human SNP ID | rs3817334 |
|---|---|
| Human chromosome | chr11 |
| Human SNP position | 47629441 |
| Pig chromosome | chr2 |
| Pig SNP position | 16172606 |
2.Annotation Information
| PubMed ID | 20935630 |
|---|---|
| Journal | Nat Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/20935630 |
| Study | Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. |
| Disease/Trait | Body mass index |
| Initial sample | Up to 123,865 European ancestry individuals |
| Replication sample | Up to 125,931 European ancestry individuals |
| Region | 11p11.2 |
| Chromosome id | chr11 |
| Chromosome position | 47629441 |
| Reported gene | MTCH2, NDUFS3, CUGBP1 |
| Mapped gene | MTCH2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 23788 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3817334-T |
| SNPs | rs3817334 |
| Merged | 0 |
| SNP id current | 3817334 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.41 |
| P value | 0.000000000002 |
| Pvalue mlog | 11.698970004336 |
| P value text | |
| Or beta | 0.06 |
| %95 Ci | [0.02-0.10] kg/m2 increase |
| Platform | Affymetrix, Illumina, Perlegen [~ 2800000] (imputed) |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST000830 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 11p11.2 |
| Chromosome id | chr11 |
| Chromosome position | 47629441 |
| Reported gene | MTCH2 |
| Mapped gene | MTCH2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 23788 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3817334-T |
| SNPs | rs3817334 |
| Merged | 0 |
| SNP id current | 3817334 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.405 |
| P value | 0.0000000002 |
| Pvalue mlog | 9.69897000433601 |
| P value text | (EA, men) |
| Or beta | 0.026 |
| %95 Ci | [0.018-0.034] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 11p11.2 |
| Chromosome id | chr11 |
| Chromosome position | 47629441 |
| Reported gene | MTCH2 |
| Mapped gene | MTCH2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 23788 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3817334-T |
| SNPs | rs3817334 |
| Merged | 0 |
| SNP id current | 3817334 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.409 |
| P value | 0.00000000002 |
| Pvalue mlog | 10.698970004336 |
| P value text | (EA, women) |
| Or beta | 0.027 |
| %95 Ci | [0.019-0.034] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 11p11.2 |
| Chromosome id | chr11 |
| Chromosome position | 47629441 |
| Reported gene | MTCH2 |
| Mapped gene | MTCH2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 23788 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3817334-T |
| SNPs | rs3817334 |
| Merged | 0 |
| SNP id current | 3817334 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.407 |
| P value | 0.00000000000000005 |
| Pvalue mlog | 16.3010299956639 |
| P value text | (EA) |
| Or beta | 0.026 |
| %95 Ci | [0.02-0.032] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 11p11.2 |
| Chromosome id | chr11 |
| Chromosome position | 47629441 |
| Reported gene | MTCH2 |
| Mapped gene | MTCH2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 23788 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3817334-T |
| SNPs | rs3817334 |
| Merged | 0 |
| SNP id current | 3817334 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.401 |
| P value | 0.00000000000000001 |
| Pvalue mlog | 17 |
| P value text | |
| Or beta | 0.026 |
| %95 Ci | [0.02-0.031] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
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