SNP Detail For rs3815087
1.Mapping Information
Human SNP ID rs3815087
Human chromosome chr6
Human SNP position 31125810
Pig chromosome chr7
Pig SNP position 27303884
2.Annotation Information
PubMed ID21801394
JournalOrphanet J Rare Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/21801394
StudyGenome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.
Disease/TraitDrug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)
Initial sample424 European ancestry cases, 1,881 European ancestry controls
Replication sampleNA
Region6p21.33
Chromosome idchr6
Chromosome position31125810
Reported genePSORS1C1
Mapped genePSORS1C1
Upstream gene id
Downstream gene id
SNP gene ids170679
Upstream gene distance
Downstream gene distance
SNP risk allelers3815087-A
SNPsrs3815087
Merged0
SNP id current3815087
Context5_prime_UTR_variant
Intergenic0
Allele frequency0.21
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta1.53
%95 Ci[1.29-1.80]
PlatformIllumina [268914]
CNVN
Mapped traitStevens-Johnson syndrome, toxic epidermal necrolysis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004276, http://www.ebi.ac.uk/efo/EFO_0004775
Study accessionGCST001181
PubMed ID20041166
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20041166
StudyCommon genetic variation and the control of HIV-1 in humans.
Disease/TraitHIV-1 control
Initial sample2,362 European ancestry cases
Replication sampleNA
Region6p21.33
Chromosome idchr6
Chromosome position31125810
Reported geneCDSN
Mapped genePSORS1C1
Upstream gene id
Downstream gene id
SNP gene ids170679
Upstream gene distance
Downstream gene distance
SNP risk allelers3815087-?
SNPsrs3815087
Merged0
SNP id current3815087
Context5_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.00000008
Pvalue mlog7.09691001300805
P value text(progression)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitHIV-1 infection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180
Study accessionGCST000549