Human SNP ID | rs3815087 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31125810 |
Pig chromosome | chr7 |
Pig SNP position | 27303884 |
PubMed ID | 21801394 |
---|---|
Journal | Orphanet J Rare Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/21801394 |
Study | Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe. |
Disease/Trait | Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN) |
Initial sample | 424 European ancestry cases, 1,881 European ancestry controls |
Replication sample | NA |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31125810 |
Reported gene | PSORS1C1 |
Mapped gene | PSORS1C1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 170679 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3815087-A |
SNPs | rs3815087 |
Merged | 0 |
SNP id current | 3815087 |
Context | 5_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.21 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 1.53 |
%95 Ci | [1.29-1.80] |
Platform | Illumina [268914] |
CNV | N |
Mapped trait | Stevens-Johnson syndrome, toxic epidermal necrolysis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004276, http://www.ebi.ac.uk/efo/EFO_0004775 |
Study accession | GCST001181 |
PubMed ID | 20041166 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20041166 |
Study | Common genetic variation and the control of HIV-1 in humans. |
Disease/Trait | HIV-1 control |
Initial sample | 2,362 European ancestry cases |
Replication sample | NA |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31125810 |
Reported gene | CDSN |
Mapped gene | PSORS1C1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 170679 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3815087-? |
SNPs | rs3815087 |
Merged | 0 |
SNP id current | 3815087 |
Context | 5_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | (progression) |
Or beta | |
%95 Ci | |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | HIV-1 infection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180 |
Study accession | GCST000549 |