SNP Detail For rs3814333
1.Mapping Information
Human SNP ID rs3814333
Human chromosome chr1
Human SNP position 184037985
Pig chromosome chr9
Pig SNP position 137611886
2.Annotation Information
PubMed ID23563607
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23563607
StudyGenome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.
Disease/TraitHeight
Initial sample8,097 European ancestry tall individuals, 8,099 European ancestry short individuals
Replication sample4,872 European ancestry tall individuals, 4,831 European ancestry short individuals
Region1q25.3
Chromosome idchr1
Chromosome position184037985
Reported geneGLT25D2
Mapped geneCOLGALT2
Upstream gene id
Downstream gene id
SNP gene ids23127
Upstream gene distance
Downstream gene distance
SNP risk allelers3814333-T
SNPsrs3814333
Merged0
SNP id current3814333
Contextupstream_gene_variant
Intergenic0
Allele frequency0.33
P value0.0000000000002
Pvalue mlog12.698970004336
P value text
Or beta1.17
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 2800000] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST001956
PubMed ID25282103
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25282103
StudyDefining the role of common variation in the genomic and biological architecture of adult human height.
Disease/TraitHeight
Initial sample253,288 European ancestry individuals
Replication sample80,067 European ancestry individuals
Region1q25.3
Chromosome idchr1
Chromosome position184037985
Reported geneGLT25D2
Mapped geneCOLGALT2
Upstream gene id
Downstream gene id
SNP gene ids23127
Upstream gene distance
Downstream gene distance
SNP risk allelers3814333-T
SNPsrs3814333
Merged0
SNP id current3814333
Contextupstream_gene_variant
Intergenic0
Allele frequency0.323
P value5E-51
Pvalue mlog50.3010299956639
P value text
Or beta0.049
%95 Ci[0.043-0.055] unit increase
PlatformAffymetrix, Illumina, Perlegen [2550858] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST002647