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SNP Detail For rs3813009
1.Mapping Information
| Human SNP ID | rs3813009 |
|---|---|
| Human chromosome | chr16 |
| Human SNP position | 81927353 |
| Pig chromosome | chr6 |
| Pig SNP position | 7012117 |
2.Annotation Information
| PubMed ID | 23382691 |
|---|---|
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 16q23.3 |
| Chromosome id | chr16 |
| Chromosome position | 81927353 |
| Reported gene | NR |
| Mapped gene | PLCG2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 5336 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3813009-C |
| SNPs | rs3813009 |
| Merged | 0 |
| SNP id current | 3813009 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.223729928793947 |
| P value | 0.000004 |
| Pvalue mlog | 5.39794000867203 |
| P value text | (IGP48) |
| Or beta | 0.1929 |
| %95 Ci | [0.11-0.27] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 16q23.3 |
| Chromosome id | chr16 |
| Chromosome position | 81927353 |
| Reported gene | NR |
| Mapped gene | PLCG2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 5336 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3813009-C |
| SNPs | rs3813009 |
| Merged | 0 |
| SNP id current | 3813009 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.223729928793947 |
| P value | 0.0000004 |
| Pvalue mlog | 6.39794000867203 |
| P value text | (IGP8) |
| Or beta | 0.2122 |
| %95 Ci | [0.13-0.29] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
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