SNP Detail For rs3810936
1.Mapping Information
Human SNP ID rs3810936
Human chromosome chr9
Human SNP position 114790605
Pig chromosome chr1
Pig SNP position 286441282
2.Annotation Information
PubMed ID21102463
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102463
StudyGenome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample6,333 European ancestry cases, 15,056 European ancestry controls
Replication sample15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios
Region9q32
Chromosome idchr9
Chromosome position114790605
Reported geneTNFSF8, TNFSF15
Mapped geneTNFSF15
Upstream gene id
Downstream gene id
SNP gene ids9966
Upstream gene distance
Downstream gene distance
SNP risk allelers3810936-C
SNPsrs3810936
Merged0
SNP id current3810936
Contextsynonymous_variant
Intergenic0
Allele frequency0.682
P value0.000000000000001
Pvalue mlog15
P value text
Or beta1.21
%95 Ci[1.15-1.27]
PlatformAffymetrix, Illumina [953241] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000879