PigVar
Overview
Pig SNPs
SNP Table
SNP Hit on Gene
SNP Coding
SNP lincRNA
Search SNPs by Region
Browse on Chromosome
SV
Positive Selection
Help
Manual
Pipeline
Data Statistics
Contact Us
Download
SNP Detail For rs3810291
1.Mapping Information
| Human SNP ID | rs3810291 |
|---|---|
| Human chromosome | chr19 |
| Human SNP position | 47065746 |
| Pig chromosome | chr6 |
| Pig SNP position | 48270218 |
2.Annotation Information
| PubMed ID | 20935630 |
|---|---|
| Journal | Nat Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/20935630 |
| Study | Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. |
| Disease/Trait | Body mass index |
| Initial sample | Up to 123,865 European ancestry individuals |
| Replication sample | Up to 125,931 European ancestry individuals |
| Region | 19q13.32 |
| Chromosome id | chr19 |
| Chromosome position | 47065746 |
| Reported gene | TMEM160, ZC3H4 |
| Mapped gene | ZC3H4 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 23211 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3810291-A |
| SNPs | rs3810291 |
| Merged | 0 |
| SNP id current | 3810291 |
| Context | 3_prime_UTR_variant |
| Intergenic | 0 |
| Allele frequency | 0.67 |
| P value | 0.000000000002 |
| Pvalue mlog | 11.698970004336 |
| P value text | |
| Or beta | 0.09 |
| %95 Ci | [0.05-0.13] kg/m2 increase |
| Platform | Affymetrix, Illumina, Perlegen [~ 2800000] (imputed) |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST000830 |
| PubMed ID | 24861553 |
| Journal | Hum Mol Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/24861553 |
| Study | Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index. |
| Disease/Trait | Body mass index |
| Initial sample | 82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals |
| Replication sample | Up to 47,352 East Asian ancestry individuals |
| Region | 19q13.32 |
| Chromosome id | chr19 |
| Chromosome position | 47065746 |
| Reported gene | TMEM160 |
| Mapped gene | ZC3H4 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 23211 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3810291-A |
| SNPs | rs3810291 |
| Merged | 0 |
| SNP id current | 3810291 |
| Context | 3_prime_UTR_variant |
| Intergenic | 0 |
| Allele frequency | 0.24 |
| P value | 0.0000009 |
| Pvalue mlog | 6.04575749056067 |
| P value text | |
| Or beta | 0.0333 |
| %95 Ci | [0.02-0.047] unit increase |
| Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002461 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 19q13.32 |
| Chromosome id | chr19 |
| Chromosome position | 47065746 |
| Reported gene | ZC3H4 |
| Mapped gene | ZC3H4 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 23211 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3810291-A |
| SNPs | rs3810291 |
| Merged | 0 |
| SNP id current | 3810291 |
| Context | 3_prime_UTR_variant |
| Intergenic | 0 |
| Allele frequency | 0.667 |
| P value | 0.000000007 |
| Pvalue mlog | 8.15490195998574 |
| P value text | (EA, men) |
| Or beta | 0.028 |
| %95 Ci | [0.018-0.037] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 19q13.32 |
| Chromosome id | chr19 |
| Chromosome position | 47065746 |
| Reported gene | ZC3H4 |
| Mapped gene | ZC3H4 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 23211 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3810291-A |
| SNPs | rs3810291 |
| Merged | 0 |
| SNP id current | 3810291 |
| Context | 3_prime_UTR_variant |
| Intergenic | 0 |
| Allele frequency | 0.666 |
| P value | 0.0000000003 |
| Pvalue mlog | 9.52287874528033 |
| P value text | (EA, women) |
| Or beta | 0.03 |
| %95 Ci | [0.02-0.039] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 19q13.32 |
| Chromosome id | chr19 |
| Chromosome position | 47065746 |
| Reported gene | ZC3H4 |
| Mapped gene | ZC3H4 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 23211 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3810291-A |
| SNPs | rs3810291 |
| Merged | 0 |
| SNP id current | 3810291 |
| Context | 3_prime_UTR_variant |
| Intergenic | 0 |
| Allele frequency | 0.666 |
| P value | 0.000000000000005 |
| Pvalue mlog | 14.3010299956639 |
| P value text | (EA) |
| Or beta | 0.028 |
| %95 Ci | [0.021-0.035] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 19q13.32 |
| Chromosome id | chr19 |
| Chromosome position | 47065746 |
| Reported gene | ZC3H4 |
| Mapped gene | ZC3H4 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 23211 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs3810291-A |
| SNPs | rs3810291 |
| Merged | 0 |
| SNP id current | 3810291 |
| Context | 3_prime_UTR_variant |
| Intergenic | 0 |
| Allele frequency | 0.654 |
| P value | 0.0000000000000006 |
| Pvalue mlog | 15.2218487496163 |
| P value text | |
| Or beta | 0.029 |
| %95 Ci | [0.022-0.035] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
|
Kunming Institute of Zoology, CAS
and Xi'an University of Technology ©2014-2017 All Rights Reserved.
|
|