SNP Detail For rs3806932
1.Mapping Information
Human SNP ID rs3806932
Human chromosome chr5
Human SNP position 111069977
Pig chromosome chr2
Pig SNP position 120317388
2.Annotation Information
PubMed ID20208534
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20208534
StudyCommon variants at 5q22 associate with pediatric eosinophilic esophagitis.
Disease/TraitEosinophilic esophagitis (pediatric)
Initial sample181 European ancestry cases, 1,974 European ancestry controls
Replication sample170 European ancestry cases, 1,130 European ancestry controls
Region5q22.1
Chromosome idchr5
Chromosome position111069977
Reported geneWDR36
Mapped geneLOC105379121 - TSLP
Upstream gene id105379121
Downstream gene id85480
SNP gene ids
Upstream gene distance55357
Downstream gene distance103
SNP risk allelers3806932-?
SNPsrs3806932
Merged0
SNP id current3806932
Contextupstream_gene_variant
Intergenic1
Allele frequency0.54
P value0.000000003
Pvalue mlog8.52287874528033
P value text
Or beta1.85
%95 Ci[NR]
PlatformIllumina [~ 550000]
CNVN
Mapped traiteosinophilic esophagitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004232
Study accessionGCST000620