Human SNP ID | rs3806932 |
---|---|
Human chromosome | chr5 |
Human SNP position | 111069977 |
Pig chromosome | chr2 |
Pig SNP position | 120317388 |
PubMed ID | 20208534 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20208534 |
Study | Common variants at 5q22 associate with pediatric eosinophilic esophagitis. |
Disease/Trait | Eosinophilic esophagitis (pediatric) |
Initial sample | 181 European ancestry cases, 1,974 European ancestry controls |
Replication sample | 170 European ancestry cases, 1,130 European ancestry controls |
Region | 5q22.1 |
Chromosome id | chr5 |
Chromosome position | 111069977 |
Reported gene | WDR36 |
Mapped gene | LOC105379121 - TSLP |
Upstream gene id | 105379121 |
Downstream gene id | 85480 |
SNP gene ids | |
Upstream gene distance | 55357 |
Downstream gene distance | 103 |
SNP risk allele | rs3806932-? |
SNPs | rs3806932 |
Merged | 0 |
SNP id current | 3806932 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.54 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.85 |
%95 Ci | [NR] |
Platform | Illumina [~ 550000] |
CNV | N |
Mapped trait | eosinophilic esophagitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004232 |
Study accession | GCST000620 |