Human SNP ID | rs3806624 |
---|---|
Human chromosome | chr3 |
Human SNP position | 27723132 |
Pig chromosome | chr13 |
Pig SNP position | 15922745 |
PubMed ID | 24149102 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/24149102 |
Study | Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin__s lymphoma. |
Disease/Trait | Hodgkin__s lymphoma |
Initial sample | 1,465 European ancestry cases, 6,417 European ancestry controls |
Replication sample | 1,071 European ancestry cases, 953 cases, 1,853 controls |
Region | 3p24.1 |
Chromosome id | chr3 |
Chromosome position | 27723132 |
Reported gene | EOMES |
Mapped gene | EOMES - LOC105377007 |
Upstream gene id | 8320 |
Downstream gene id | 105377007 |
SNP gene ids | |
Upstream gene distance | 417 |
Downstream gene distance | 74456 |
SNP risk allele | rs3806624-G |
SNPs | rs3806624 |
Merged | 0 |
SNP id current | 3806624 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.45 |
P value | 0.000000000001 |
Pvalue mlog | 12 |
P value text | |
Or beta | 1.26 |
%95 Ci | [1.18-1.34] |
Platform | Illumina [296129] |
CNV | N |
Mapped trait | Hodgkins lymphoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000183 |
Study accession | GCST002237 |
PubMed ID | 24390342 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 3p24.1 |
Chromosome id | chr3 |
Chromosome position | 27723132 |
Reported gene | EOMES |
Mapped gene | EOMES - LOC105377007 |
Upstream gene id | 8320 |
Downstream gene id | 105377007 |
SNP gene ids | |
Upstream gene distance | 417 |
Downstream gene distance | 74456 |
SNP risk allele | rs3806624-G |
SNPs | rs3806624 |
Merged | 0 |
SNP id current | 3806624 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.56 |
P value | 0.000000009 |
Pvalue mlog | 8.04575749056067 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.05-1.11] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |
PubMed ID | 24390342 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 3p24.1 |
Chromosome id | chr3 |
Chromosome position | 27723132 |
Reported gene | EOMES |
Mapped gene | EOMES - LOC105377007 |
Upstream gene id | 8320 |
Downstream gene id | 105377007 |
SNP gene ids | |
Upstream gene distance | 417 |
Downstream gene distance | 74456 |
SNP risk allele | rs3806624-G |
SNPs | rs3806624 |
Merged | 0 |
SNP id current | 3806624 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.46 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | (EA) |
Or beta | 1.08 |
%95 Ci | [1.05-1.12] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |