Human SNP ID | rs3806156 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32405921 |
Pig chromosome | chr7 |
Pig SNP position | 29017351 |
PubMed ID | 20410501 |
---|---|
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/20410501 |
Study | Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo. |
Disease/Trait | Vitiligo |
Initial sample | 1,392 European ancestry cases, 2,629 European ancestry controls |
Replication sample | 647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32405921 |
Reported gene | HLA-DRA, BTNL2, HLA-DQA1 |
Mapped gene | BTNL2, LOC101929163 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 56244, 101929163 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3806156-T |
SNPs | rs3806156 |
Merged | 0 |
SNP id current | 3806156 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.37 |
P value | 7E-19 |
Pvalue mlog | 18.1549019599857 |
P value text | |
Or beta | 1.42 |
%95 Ci | [1.32-1.54] |
Platform | Illumina [520460] |
CNV | N |
Mapped trait | Vitiligo |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004208 |
Study accession | GCST000662 |