SNP Detail For rs3806156
1.Mapping Information
Human SNP ID rs3806156
Human chromosome chr6
Human SNP position 32405921
Pig chromosome chr7
Pig SNP position 29017351
2.Annotation Information
PubMed ID20410501
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/20410501
StudyVariant of TYR and autoimmunity susceptibility loci in generalized vitiligo.
Disease/TraitVitiligo
Initial sample1,392 European ancestry cases, 2,629 European ancestry controls
Replication sample647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families
Region6p21.32
Chromosome idchr6
Chromosome position32405921
Reported geneHLA-DRA, BTNL2, HLA-DQA1
Mapped geneBTNL2, LOC101929163
Upstream gene id
Downstream gene id
SNP gene ids56244, 101929163
Upstream gene distance
Downstream gene distance
SNP risk allelers3806156-T
SNPsrs3806156
Merged0
SNP id current3806156
Contextintron_variant
Intergenic0
Allele frequency0.37
P value7E-19
Pvalue mlog18.1549019599857
P value text
Or beta1.42
%95 Ci[1.32-1.54]
PlatformIllumina [520460]
CNVN
Mapped traitVitiligo
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004208
Study accessionGCST000662