Human SNP ID | rs3799296 |
---|---|
Human chromosome | chr6 |
Human SNP position | 542416 |
Pig chromosome | chr7 |
Pig SNP position | 89197 |
PubMed ID | 25903422 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25903422 |
Study | Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility. |
Disease/Trait | Psoriasis |
Initial sample | 3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls |
Replication sample | 5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls |
Region | 6p25.3 |
Chromosome id | chr6 |
Chromosome position | 542416 |
Reported gene | EXOC2, IRF4 |
Mapped gene | EXOC2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55770 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3799296-T |
SNPs | rs3799296 |
Merged | 0 |
SNP id current | 3799296 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.419 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.05-1.14] |
Platform | Illumina [up to 4778154] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002874 |