SNP Detail For rs3799296
1.Mapping Information
Human SNP ID rs3799296
Human chromosome chr6
Human SNP position 542416
Pig chromosome chr7
Pig SNP position 89197
2.Annotation Information
PubMed ID25903422
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25903422
StudyGenome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.
Disease/TraitPsoriasis
Initial sample3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls
Replication sample5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls
Region6p25.3
Chromosome idchr6
Chromosome position542416
Reported geneEXOC2, IRF4
Mapped geneEXOC2
Upstream gene id
Downstream gene id
SNP gene ids55770
Upstream gene distance
Downstream gene distance
SNP risk allelers3799296-T
SNPsrs3799296
Merged0
SNP id current3799296
Contextintron_variant
Intergenic0
Allele frequency0.419
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.09
%95 Ci[1.05-1.14]
PlatformIllumina [up to 4778154] (imputed)
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002874