SNP Detail For rs3796804
1.Mapping Information
Human SNP ID rs3796804
Human chromosome chr4
Human SNP position 81088553
Pig chromosome chr8
Pig SNP position 146146956
2.Annotation Information
PubMed ID22174851
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22174851
StudyGenomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.
Disease/TraitHIV-1 susceptibility
Initial sample496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples
Replication sampleNA
Region4q21.21
Chromosome idchr4
Chromosome position81088553
Reported genePRKG2
Mapped genePRKG2
Upstream gene id
Downstream gene id
SNP gene ids5593
Upstream gene distance
Downstream gene distance
SNP risk allelers3796804-?
SNPsrs3796804
Merged0
SNP id current3796804
Context3_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta
%95 Ci
PlatformIllumina [990115]
CNVN
Mapped traitHIV-1 infection, Susceptibility to viral and mycobacterial infections
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.orpha.net/ORDO/Orphanet_391311
Study accessionGCST001353