Human SNP ID | rs3796804 |
---|---|
Human chromosome | chr4 |
Human SNP position | 81088553 |
Pig chromosome | chr8 |
Pig SNP position | 146146956 |
PubMed ID | 22174851 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/22174851 |
Study | Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure. |
Disease/Trait | HIV-1 susceptibility |
Initial sample | 496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples |
Replication sample | NA |
Region | 4q21.21 |
Chromosome id | chr4 |
Chromosome position | 81088553 |
Reported gene | PRKG2 |
Mapped gene | PRKG2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5593 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3796804-? |
SNPs | rs3796804 |
Merged | 0 |
SNP id current | 3796804 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [990115] |
CNV | N |
Mapped trait | HIV-1 infection, Susceptibility to viral and mycobacterial infections |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.orpha.net/ORDO/Orphanet_391311 |
Study accession | GCST001353 |