SNP Detail For rs3796619
1.Mapping Information
Human SNP ID rs3796619
Human chromosome chr4
Human SNP position 1101493
Pig chromosome chr14
Pig SNP position 11410616
2.Annotation Information
PubMed ID18239089
JournalScience
Linkwww.ncbi.nlm.nih.gov/pubmed/18239089
StudySequence variants in the RNF212 gene associate with genome-wide recombination rate.
Disease/TraitRecombination rate (males)
Initial sample1,887 male individuals
Replication sample1,248 male individuals
Region4p16.3
Chromosome idchr4
Chromosome position1101493
Reported geneRNF212, SPON2
Mapped geneRNF212
Upstream gene id
Downstream gene id
SNP gene ids285498
Upstream gene distance
Downstream gene distance
SNP risk allelers3796619-T
SNPsrs3796619
Merged0
SNP id current3796619
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.33 (men and women combined)
P value3E-24
Pvalue mlog23.5228787452803
P value text
Or beta70.7
%95 Ci[57.1-84.3] cM decrease
PlatformIllumina [309241]
CNVN
Mapped traitrecombination rate
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004863
Study accessionGCST000148