Human SNP ID | rs3796619 |
---|---|
Human chromosome | chr4 |
Human SNP position | 1101493 |
Pig chromosome | chr14 |
Pig SNP position | 11410616 |
PubMed ID | 18239089 |
---|---|
Journal | Science |
Link | www.ncbi.nlm.nih.gov/pubmed/18239089 |
Study | Sequence variants in the RNF212 gene associate with genome-wide recombination rate. |
Disease/Trait | Recombination rate (males) |
Initial sample | 1,887 male individuals |
Replication sample | 1,248 male individuals |
Region | 4p16.3 |
Chromosome id | chr4 |
Chromosome position | 1101493 |
Reported gene | RNF212, SPON2 |
Mapped gene | RNF212 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 285498 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3796619-T |
SNPs | rs3796619 |
Merged | 0 |
SNP id current | 3796619 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.33 (men and women combined) |
P value | 3E-24 |
Pvalue mlog | 23.5228787452803 |
P value text | |
Or beta | 70.7 |
%95 Ci | [57.1-84.3] cM decrease |
Platform | Illumina [309241] |
CNV | N |
Mapped trait | recombination rate |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004863 |
Study accession | GCST000148 |