SNP Detail For rs3792109
1.Mapping Information
Human SNP ID rs3792109
Human chromosome chr2
Human SNP position 233275771
Pig chromosome chr15
Pig SNP position 147698303
2.Annotation Information
PubMed ID21102463
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102463
StudyGenome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample6,333 European ancestry cases, 15,056 European ancestry controls
Replication sample15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios
Region2q37.1
Chromosome idchr2
Chromosome position233275771
Reported geneATG16L1
Mapped geneATG16L1, SCARNA5
Upstream gene id
Downstream gene id
SNP gene ids55054, 677775
Upstream gene distance
Downstream gene distance
SNP risk allelers3792109-A
SNPsrs3792109
Merged0
SNP id current3792109
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.529
P value7E-41
Pvalue mlog40.1549019599857
P value text
Or beta1.34
%95 Ci[1.29-1.40]
PlatformAffymetrix, Illumina [953241] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000879
PubMed ID22936669
JournalGut
Linkwww.ncbi.nlm.nih.gov/pubmed/22936669
StudyA genome-wide association study on a southern European population identifies a new Crohn__s disease susceptibility locus at RBX1-EP300.
Disease/TraitCrohn__s disease
Initial sample1,277 European ancestry cases, 1,488 European ancestry controls
Replication sample1,365 European ancestry cases, 1,396 European ancestry controls
Region2q37.1
Chromosome idchr2
Chromosome position233275771
Reported geneATG16L1
Mapped geneATG16L1, SCARNA5
Upstream gene id
Downstream gene id
SNP gene ids55054, 677775
Upstream gene distance
Downstream gene distance
SNP risk allelers3792109-A
SNPsrs3792109
Merged0
SNP id current3792109
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta1.38
%95 Ci[NR]
PlatformIllumina [508934]
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST001652