Human SNP ID | rs3792109 |
---|---|
Human chromosome | chr2 |
Human SNP position | 233275771 |
Pig chromosome | chr15 |
Pig SNP position | 147698303 |
PubMed ID | 21102463 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21102463 |
Study | Genome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci. |
Disease/Trait | Crohn__s disease |
Initial sample | 6,333 European ancestry cases, 15,056 European ancestry controls |
Replication sample | 15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios |
Region | 2q37.1 |
Chromosome id | chr2 |
Chromosome position | 233275771 |
Reported gene | ATG16L1 |
Mapped gene | ATG16L1, SCARNA5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55054, 677775 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3792109-A |
SNPs | rs3792109 |
Merged | 0 |
SNP id current | 3792109 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.529 |
P value | 7E-41 |
Pvalue mlog | 40.1549019599857 |
P value text | |
Or beta | 1.34 |
%95 Ci | [1.29-1.40] |
Platform | Affymetrix, Illumina [953241] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST000879 |
PubMed ID | 22936669 |
Journal | Gut |
Link | www.ncbi.nlm.nih.gov/pubmed/22936669 |
Study | A genome-wide association study on a southern European population identifies a new Crohn__s disease susceptibility locus at RBX1-EP300. |
Disease/Trait | Crohn__s disease |
Initial sample | 1,277 European ancestry cases, 1,488 European ancestry controls |
Replication sample | 1,365 European ancestry cases, 1,396 European ancestry controls |
Region | 2q37.1 |
Chromosome id | chr2 |
Chromosome position | 233275771 |
Reported gene | ATG16L1 |
Mapped gene | ATG16L1, SCARNA5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55054, 677775 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3792109-A |
SNPs | rs3792109 |
Merged | 0 |
SNP id current | 3792109 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | |
Or beta | 1.38 |
%95 Ci | [NR] |
Platform | Illumina [508934] |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST001652 |