SNP Detail For rs3791556
1.Mapping Information
Human SNP ID rs3791556
Human chromosome chr2
Human SNP position 239191276
Pig chromosome chr15
Pig SNP position 152920090
2.Annotation Information
PubMed ID23453885
JournalLancet
Linkwww.ncbi.nlm.nih.gov/pubmed/23453885
StudyIdentification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
Disease/TraitAutism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)
Initial sample6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder tr
Replication sampleNA
Region2q37.3
Chromosome idchr2
Chromosome position239191276
Reported geneHDAC4, MGC16025
Mapped geneHDAC4
Upstream gene id
Downstream gene id
SNP gene ids9759
Upstream gene distance
Downstream gene distance
SNP risk allelers3791556-A
SNPsrs3791556
Merged0
SNP id current3791556
Contextintron_variant
Intergenic0
Allele frequency
P value0.000008
Pvalue mlog5.09691001300805
P value text(Modelling analysis)
Or beta1.08
%95 Ci[1.04-1.11]
PlatformNR [1252901] (imputed)
CNVN
Mapped traitattention deficit hyperactivity disorder, unipolar depression, schizophrenia, autism spectrum disorder, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003888, http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0003756, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001877