Human SNP ID | rs3788556 |
---|---|
Human chromosome | chr22 |
Human SNP position | 39576157 |
Pig chromosome | chr5 |
Pig SNP position | 5999346 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 22q13.1 |
Chromosome id | chr22 |
Chromosome position | 39576157 |
Reported gene | NR |
Mapped gene | CACNA1I |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8911 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3788556-C |
SNPs | rs3788556 |
Merged | 0 |
SNP id current | 3788556 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.56038034270415 |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | (IGP39) |
Or beta | 0.1799 |
%95 Ci | [0.12-0.24] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |