SNP Detail For rs3788556
1.Mapping Information
Human SNP ID rs3788556
Human chromosome chr22
Human SNP position 39576157
Pig chromosome chr5
Pig SNP position 5999346
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region22q13.1
Chromosome idchr22
Chromosome position39576157
Reported geneNR
Mapped geneCACNA1I
Upstream gene id
Downstream gene id
SNP gene ids8911
Upstream gene distance
Downstream gene distance
SNP risk allelers3788556-C
SNPsrs3788556
Merged0
SNP id current3788556
Contextintron_variant
Intergenic0
Allele frequency0.56038034270415
P value0.00000005
Pvalue mlog7.30102999566398
P value text(IGP39)
Or beta0.1799
%95 Ci[0.12-0.24] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848