SNP Detail For rs3786094
1.Mapping Information
Human SNP ID rs3786094
Human chromosome chr17
Human SNP position 9971888
Pig chromosome chr12
Pig SNP position 57667918
2.Annotation Information
PubMed ID23648065
JournalCancer Sci
Linkwww.ncbi.nlm.nih.gov/pubmed/23648065
StudyGenome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
Disease/TraitAdverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)
Initial sample218 Japanese ancestry cases, 364 Japanese controls
Replication sampleNA
Region17p13.1
Chromosome idchr17
Chromosome position9971888
Reported geneGAS7
Mapped geneGAS7
Upstream gene id
Downstream gene id
SNP gene ids8522
Upstream gene distance
Downstream gene distance
SNP risk allelers3786094-C
SNPsrs3786094
Merged0
SNP id current3786094
Contextintron_variant
Intergenic0
Allele frequency0.422
P value0.000006
Pvalue mlog5.22184874961635
P value text(Recessive model)
Or beta1.531
%95 Ci[1.206-1.944]
PlatformIllumina [733202]
CNVN
Mapped traitresponse to paclitaxel, response to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_1901555, http://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST001999