Human SNP ID | rs3786094 |
---|---|
Human chromosome | chr17 |
Human SNP position | 9971888 |
Pig chromosome | chr12 |
Pig SNP position | 57667918 |
PubMed ID | 23648065 |
---|---|
Journal | Cancer Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/23648065 |
Study | Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. |
Disease/Trait | Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel) |
Initial sample | 218 Japanese ancestry cases, 364 Japanese controls |
Replication sample | NA |
Region | 17p13.1 |
Chromosome id | chr17 |
Chromosome position | 9971888 |
Reported gene | GAS7 |
Mapped gene | GAS7 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8522 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3786094-C |
SNPs | rs3786094 |
Merged | 0 |
SNP id current | 3786094 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.422 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (Recessive model) |
Or beta | 1.531 |
%95 Ci | [1.206-1.944] |
Platform | Illumina [733202] |
CNV | N |
Mapped trait | response to paclitaxel, response to antineoplastic agent |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_1901555, http://purl.obolibrary.org/obo/GO_0097327 |
Study accession | GCST001999 |