SNP Detail For rs3785856
1.Mapping Information
Human SNP ID rs3785856
Human chromosome chr17
Human SNP position 61314018
Pig chromosome chr12
Pig SNP position 38423694
2.Annotation Information
PubMed ID23468962
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23468962
StudyA genome-wide scan for breast cancer risk haplotypes among African American women.
Disease/TraitBreast cancer
Initial sample3,016 African American cases, 2,745 African American controls
Replication sampleNA
Region17q23.2
Chromosome idchr17;17
Chromosome position61319088;61314018
Reported gene
Mapped geneBCAS3; BCAS3
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers10853029-?; rs3785856-?
SNPsrs10853029; rs3785856
Merged0
SNP id current
Contextintron_variant; intron_variant
Intergenic
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text(Haplotype-?????)
Or beta
%95 Ci
PlatformIllumina [1006480]
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001879