Human SNP ID | rs3784609 |
---|---|
Human chromosome | chr15 |
Human SNP position | 60618351 |
Pig chromosome | chr1 |
Pig SNP position | 123114199 |
PubMed ID | 21116278 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/21116278 |
Study | Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer__s disease. |
Disease/Trait | Total ventricular volume (Alzheimer__s disease interaction) |
Initial sample | 424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer__s disease cases, 279 European ancestry controls |
Replication sample | NA |
Region | 15q22.2 |
Chromosome id | chr15 |
Chromosome position | 60618351 |
Reported gene | RORA |
Mapped gene | RORA, RORA-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6095, 101928784 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3784609-? |
SNPs | rs3784609 |
Merged | 0 |
SNP id current | 3784609 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 0.005 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [478011] |
CNV | N |
Mapped trait | Alzheimers disease, brain volume measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249, http://www.ebi.ac.uk/efo/EFO_0006930 |
Study accession | GCST000892 |