SNP Detail For rs3784609
1.Mapping Information
Human SNP ID rs3784609
Human chromosome chr15
Human SNP position 60618351
Pig chromosome chr1
Pig SNP position 123114199
2.Annotation Information
PubMed ID21116278
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/21116278
StudyGenome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer__s disease.
Disease/TraitTotal ventricular volume (Alzheimer__s disease interaction)
Initial sample424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer__s disease cases, 279 European ancestry controls
Replication sampleNA
Region15q22.2
Chromosome idchr15
Chromosome position60618351
Reported geneRORA
Mapped geneRORA, RORA-AS1
Upstream gene id
Downstream gene id
SNP gene ids6095, 101928784
Upstream gene distance
Downstream gene distance
SNP risk allelers3784609-?
SNPsrs3784609
Merged0
SNP id current3784609
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.005
%95 Ci[NR] unit decrease
PlatformIllumina [478011]
CNVN
Mapped traitAlzheimers disease, brain volume measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249, http://www.ebi.ac.uk/efo/EFO_0006930
Study accessionGCST000892