SNP Detail For rs3781663
1.Mapping Information
Human SNP ID rs3781663
Human chromosome chr11
Human SNP position 70153146
Pig chromosome chr2
Pig SNP position 1602767
2.Annotation Information
PubMed ID25866641
JournalBiomark Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25866641
StudyA genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes.
Disease/TraitSurvival in rectal cancer
Initial sample171 European ancestry cases
Replication sampleNA
Region11q13.3
Chromosome idchr11
Chromosome position70153146
Reported geneANO1
Mapped geneANO1
Upstream gene id
Downstream gene id
SNP gene ids55107
Upstream gene distance
Downstream gene distance
SNP risk allelers3781663-?
SNPsrs3781663
Merged0
SNP id current3781663
Contextintron_variant
Intergenic0
Allele frequency
P value0.000008
Pvalue mlog5.09691001300805
P value text(disease-free survival)
Or beta2.24
%95 Ci[1.57-3.19]
PlatformIllumina [729737]
CNVN
Mapped traitdisease free survival, rectum cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000409, http://www.ebi.ac.uk/efo/EFO_1000657
Study accessionGCST002821