SNP Detail For rs3779483
1.Mapping Information
Human SNP ID rs3779483
Human chromosome chr7
Human SNP position 95826533
Pig chromosome chr9
Pig SNP position 82867951
2.Annotation Information
PubMed ID25188341
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25188341
StudyGenome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias.
Disease/TraitDementia and core Alzheimer__s disease neuropathologic changes
Initial sampleup to 3,887 cases, up to 1,027 controls
Replication sampleNA
Region7q21.3
Chromosome idchr7
Chromosome position95826533
Reported geneDYNC1I1
Mapped geneDYNC1I1
Upstream gene id
Downstream gene id
SNP gene ids1780
Upstream gene distance
Downstream gene distance
SNP risk allelers3779483-T
SNPsrs3779483
Merged0
SNP id current3779483
Contextintron_variant
Intergenic0
Allele frequency0.0553
P value0.000002
Pvalue mlog5.69897000433601
P value text(Primary)
Or beta1.2925
%95 Ci[0.76-1.82] unit decrease
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitdementia, Alzheimer__s disease neuropathologic change
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003862, http://www.ebi.ac.uk/efo/EFO_0006801
Study accessionGCST002593
PubMed ID25188341
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25188341
StudyGenome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias.
Disease/TraitDementia and core Alzheimer__s disease neuropathologic changes
Initial sampleup to 3,887 cases, up to 1,027 controls
Replication sampleNA
Region7q21.3
Chromosome idchr7
Chromosome position95826533
Reported geneDYNC1I1
Mapped geneDYNC1I1
Upstream gene id
Downstream gene id
SNP gene ids1780
Upstream gene distance
Downstream gene distance
SNP risk allelers3779483-T
SNPsrs3779483
Merged0
SNP id current3779483
Contextintron_variant
Intergenic0
Allele frequency0.0554
P value0.000002
Pvalue mlog5.69897000433601
P value text(Complete)
Or beta1.2911
%95 Ci[0.76-1.82] unit decrease
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitdementia, Alzheimer__s disease neuropathologic change
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003862, http://www.ebi.ac.uk/efo/EFO_0006801
Study accessionGCST002593