SNP Detail For rs3779273
1.Mapping Information
Human SNP ID rs3779273
Human chromosome chr7
Human SNP position 78199623
Pig chromosome chr9
Pig SNP position 112454595
2.Annotation Information
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region7q21.11
Chromosome idchr7
Chromosome position78199623
Reported geneMAGI2
Mapped geneMAGI2, LOC105375367
Upstream gene id
Downstream gene id
SNP gene ids9863, 105375367
Upstream gene distance
Downstream gene distance
SNP risk allelers3779273-G
SNPsrs3779273
Merged0
SNP id current3779273
Contextintron_variant
Intergenic0
Allele frequency0.586
P value0.000002
Pvalue mlog5.69897000433601
P value text(EA)
Or beta0.015
%95 Ci[0.0088-0.021] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region7q21.11
Chromosome idchr7
Chromosome position78199623
Reported geneMAGI2
Mapped geneMAGI2, LOC105375367
Upstream gene id
Downstream gene id
SNP gene ids9863, 105375367
Upstream gene distance
Downstream gene distance
SNP risk allelers3779273-G
SNPsrs3779273
Merged0
SNP id current3779273
Contextintron_variant
Intergenic0
Allele frequency0.586
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta0.015
%95 Ci[0.0095-0.0213] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783