Human SNP ID | rs3777200 |
---|---|
Human chromosome | chr5 |
Human SNP position | 95899087 |
Pig chromosome | chr2 |
Pig SNP position | 106417036 |
PubMed ID | 23022100 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23022100 |
Study | Discovery and fine mapping of serum protein loci through transethnic meta-analysis. |
Disease/Trait | Serum total protein level |
Initial sample | Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals |
Replication sample | NA |
Region | 5q15 |
Chromosome id | chr5 |
Chromosome position | 95899087 |
Reported gene | ELL2 |
Mapped gene | ELL2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 22936 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3777200-T |
SNPs | rs3777200 |
Merged | 0 |
SNP id current | 3777200 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.27 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 0.0204 |
%95 Ci | [0.013-0.027] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | total blood protein measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004536 |
Study accession | GCST001698 |