SNP Detail For rs3768644
1.Mapping Information
Human SNP ID rs3768644
Human chromosome chr2
Human SNP position 72134376
Pig chromosome chr3
Pig SNP position 73929159
2.Annotation Information
PubMed ID25056061
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25056061
StudyBiological insights from 108 schizophrenia-associated genetic loci.
Disease/TraitSchizophrenia
Initial sample32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls
Replication sample1,513 European ancestry cases, 66,236 European ancestry controls
Region2p13.2
Chromosome idchr2
Chromosome position72134376
Reported geneCYP26B1
Mapped geneCYP26B1
Upstream gene id
Downstream gene id
SNP gene ids56603
Upstream gene distance
Downstream gene distance
SNP risk allelers3768644-G
SNPsrs3768644
Merged0
SNP id current3768644
Contextintron_variant
Intergenic0
Allele frequency0.899
P value0.000000007
Pvalue mlog8.15490195998574
P value text
Or beta1.1061947
%95 Ci[1.07-1.14]
PlatformAffymetrix, Illumina [9005918] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002539
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region2p13.2
Chromosome idchr2
Chromosome position72134376
Reported geneNR
Mapped geneCYP26B1
Upstream gene id
Downstream gene id
SNP gene ids56603
Upstream gene distance
Downstream gene distance
SNP risk allelers3768644-G
SNPsrs3768644
Merged0
SNP id current3768644
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000001
Pvalue mlog7
P value text
Or beta1.098901
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048