SNP Detail For rs3767633
1.Mapping Information
Human SNP ID rs3767633
Human chromosome chr1
Human SNP position 161856825
Pig chromosome chr4
Pig SNP position 96744036
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region1q23.3
Chromosome idchr1
Chromosome position161856825
Reported geneNR
Mapped geneATF6
Upstream gene id
Downstream gene id
SNP gene ids22926
Upstream gene distance
Downstream gene distance
SNP risk allelers3767633-T
SNPsrs3767633
Merged0
SNP id current3767633
Contextintron_variant
Intergenic0
Allele frequency0.145416417670683
P value0.000008
Pvalue mlog5.09691001300805
P value text(IGP39)
Or beta0.2053
%95 Ci[0.12-0.3] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848