SNP Detail For rs3764650
1.Mapping Information
Human SNP ID rs3764650
Human chromosome chr19
Human SNP position 1046521
Pig chromosome chr2
Pig SNP position 77627421
2.Annotation Information
PubMed ID21460840
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21460840
StudyCommon variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer__s disease.
Disease/TraitAlzheimer__s disease
Initial sample6,688 European ancestry cases, 13,685 European ancestry controls
Replication sample13,182 European ancestry cases, 26,161 European ancestry controls
Region19p13.3
Chromosome idchr19
Chromosome position1046521
Reported geneABCA7
Mapped geneABCA7
Upstream gene id
Downstream gene id
SNP gene ids10347
Upstream gene distance
Downstream gene distance
SNP risk allelers3764650-?
SNPsrs3764650
Merged0
SNP id current3764650
Contextintron_variant
Intergenic0
Allele frequency0.1
P value0.00000000000000005
Pvalue mlog16.3010299956639
P value text
Or beta1.23
%95 Ci[1.18-1.30]
PlatformAffymetrix, Illumina [496763]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST001025