SNP Detail For rs3763309
1.Mapping Information
Human SNP ID rs3763309
Human chromosome chr6
Human SNP position 32408196
Pig chromosome chr7
Pig SNP position 29019169
2.Annotation Information
PubMed ID24449572
JournalArthritis Rheumatol
Linkwww.ncbi.nlm.nih.gov/pubmed/24449572
StudyNovel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.
Disease/TraitRheumatoid arthritis
Initial sample3,034 European ancestry cases, 5,271 European ancestry controls
Replication sample4,726 European ancestry cases, 2,625 European ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32408196
Reported geneHLA鈥�RB1
Mapped geneBTNL2
Upstream gene id
Downstream gene id
SNP gene ids56244
Upstream gene distance
Downstream gene distance
SNP risk allelers3763309-?
SNPsrs3763309
Merged0
SNP id current3763309
Contextupstream_gene_variant
Intergenic0
Allele frequency
P value2E-124
Pvalue mlog123.698970004336
P value text
Or beta2.3
%95 Ci[2.14-2.46]
PlatformAffymetrix, Illumina [1831729] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST002323