Human SNP ID | rs3758354 |
---|---|
Human chromosome | chr9 |
Human SNP position | 73149649 |
Pig chromosome | chr1 |
Pig SNP position | 252987810 |
PubMed ID | 20713499 |
---|---|
Journal | Am J Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/20713499 |
Study | Cross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression. |
Disease/Trait | Schizophrenia, bipolar disorder and depression (combined) |
Initial sample | 402 European ancestry schizophrenia cases, 1,021 European ancestry bipolar I cases, 493 European ancestry bipolar II cases, 1,210 European ancestry MDD cases, 1,060 European ancestry controls |
Replication sample | NA |
Region | 9q21.13 |
Chromosome id | chr9 |
Chromosome position | 73149649 |
Reported gene | ANXA1 |
Mapped gene | LOC105376081 - ANXA1 |
Upstream gene id | 105376081 |
Downstream gene id | 301 |
SNP gene ids | |
Upstream gene distance | 35733 |
Downstream gene distance | 2082 |
SNP risk allele | rs3758354-C |
SNPs | rs3758354 |
Merged | 0 |
SNP id current | 3758354 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.03 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Perlegen [1574154] (imputed) |
CNV | N |
Mapped trait | unipolar depression, mental or behavioural disorder, bipolar disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000677, http://www.ebi.ac.uk/efo/EFO_0000289 |
Study accession | GCST000774 |