SNP Detail For rs3758354
1.Mapping Information
Human SNP ID rs3758354
Human chromosome chr9
Human SNP position 73149649
Pig chromosome chr1
Pig SNP position 252987810
2.Annotation Information
PubMed ID20713499
JournalAm J Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20713499
StudyCross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression.
Disease/TraitSchizophrenia, bipolar disorder and depression (combined)
Initial sample402 European ancestry schizophrenia cases, 1,021 European ancestry bipolar I cases, 493 European ancestry bipolar II cases, 1,210 European ancestry MDD cases, 1,060 European ancestry controls
Replication sampleNA
Region9q21.13
Chromosome idchr9
Chromosome position73149649
Reported geneANXA1
Mapped geneLOC105376081 - ANXA1
Upstream gene id105376081
Downstream gene id301
SNP gene ids
Upstream gene distance35733
Downstream gene distance2082
SNP risk allelers3758354-C
SNPsrs3758354
Merged0
SNP id current3758354
Contextupstream_gene_variant
Intergenic1
Allele frequency0.03
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta
%95 Ci
PlatformAffymetrix, Perlegen [1574154] (imputed)
CNVN
Mapped traitunipolar depression, mental or behavioural disorder, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000677, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST000774