SNP Detail For rs3756407
1.Mapping Information
Human SNP ID rs3756407
Human chromosome chr5
Human SNP position 10701402
Pig chromosome chr16
Pig SNP position 86721038
2.Annotation Information
PubMed ID23934736
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/23934736
StudyGenome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.
Disease/TraitMetabolite levels (Pyroglutamine)
Initial sample1,260 African American individuals
Replication sampleNA
Region5p15.2
Chromosome idchr5
Chromosome position10701402
Reported geneDAP
Mapped geneDAP
Upstream gene id
Downstream gene id
SNP gene ids1611
Upstream gene distance
Downstream gene distance
SNP risk allelers3756407-A
SNPsrs3756407
Merged0
SNP id current3756407
Contextintron_variant
Intergenic0
Allele frequency
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.14
%95 Ci[0.2-0.08] unit increase
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitpyroglutamine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005408
Study accessionGCST002118